XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images

Ii, Kaito and Mashimo, Kota and Ozeki, Mitsunori and Yamada, Takahiro G. and Hiroi, Noriko and Funahashi, Akira (2019) XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images. Frontiers in Genetics, 10. ISSN 1664-8021

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Official URL: https://doi.org/10.3389/fgene.2019.01027

Abstract

XitoSBML is a software tool designed to create an SBML (Systems Biology Markup Language) Level 3 Version 1 document from microscopic cellular images. It is implemented as an ImageJ plug-in and is designed to create spatial models that reflect the three-dimensional cellular geometry. With XitoSBML, users can perform spatial model simulations based on realistic cellular geometry by using SBML-supported software tools, including simulators such as Virtual Cell and Spatial Simulator. XitoSBML is open-source and is available at https://github.com/spatialsimulator/XitoSBML/. XitoSBML is confirmed to run on most 32/64-bit operating systems: Windows, MacOS, and Linux.

Item Type:	Article
Subjects:	Euro Archives > Medical Science
Depositing User:	Managing Editor
Date Deposited:	24 Feb 2023 03:27
Last Modified:	07 Feb 2024 04:11
URI:	http://publish7promo.com/id/eprint/1957

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