Ii, Kaito and Mashimo, Kota and Ozeki, Mitsunori and Yamada, Takahiro G. and Hiroi, Noriko and Funahashi, Akira (2019) XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images. Frontiers in Genetics, 10. ISSN 1664-8021
![[thumbnail of pubmed-zip/versions/1/package-entries/fgene-10-01027.pdf]](http://publish7promo.com/style/images/fileicons/text.png)
pubmed-zip/versions/1/package-entries/fgene-10-01027.pdf - Published Version
Download (1MB)
Abstract
XitoSBML is a software tool designed to create an SBML (Systems Biology Markup Language) Level 3 Version 1 document from microscopic cellular images. It is implemented as an ImageJ plug-in and is designed to create spatial models that reflect the three-dimensional cellular geometry. With XitoSBML, users can perform spatial model simulations based on realistic cellular geometry by using SBML-supported software tools, including simulators such as Virtual Cell and Spatial Simulator. XitoSBML is open-source and is available at https://github.com/spatialsimulator/XitoSBML/. XitoSBML is confirmed to run on most 32/64-bit operating systems: Windows, MacOS, and Linux.
Item Type: | Article |
---|---|
Subjects: | Euro Archives > Medical Science |
Depositing User: | Managing Editor |
Date Deposited: | 24 Feb 2023 03:27 |
Last Modified: | 07 Feb 2024 04:11 |
URI: | http://publish7promo.com/id/eprint/1957 |